PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g25540.3
Common NameLR48_Vigan02g009800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 104aa    MW: 11585.5 Da    PI: 4.9099
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g25540.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.11.1e-085322956
             AP2 29 krfslgkfgtaeeAakaaiaarkklege 56
                    +r +lg+f tae+Aa+a+++a+ +++g+
  Vang06g25540.3  5 QRSWLGTFTTAEDAARAYDRAAYAMRGP 32
                    567**********************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.775139IPR001471AP2/ERF domain
SMARTSM003804.7E-7245IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-17341IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-13341IPR016177DNA-binding domain
PfamPF008478.7E-5531IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MKHGQRSWLG TFTTAEDAAR AYDRAAYAMR GPFAVLNFPD EYPPPSSSSS SSSSSSVSTS  60
SHGHVERRGR NEDENQVFEF EYFDDKLLEE LLGYDEDKSK HGK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150414e-95AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511322.12e-36PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC51e-23ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0L9TTQ62e-46A0A0L9TTQ6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SUU27e-47A0A0S3SUU2_PHAAN; Uncharacterized protein
STRINGGLYMA02G00890.16e-25(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04370.12e-14Ethylene-responsive element binding factor 14
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]